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Add somatic validation's feature extraction notebook #7

Merged
merged 22 commits into from
Nov 8, 2022
Merged

Add somatic validation's feature extraction notebook #7

merged 22 commits into from
Nov 8, 2022

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anilbey
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@anilbey anilbey commented Nov 7, 2022

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anilbey added 19 commits November 3, 2022 17:13
@anilbey
add 144 traces of sAHP IDhyperpol APThreshold for som val
d9e46c2
@anilbey
add feature extraction for somatic_validation
62a1343
@anilbey
move protocols_rheobase outside get_config
2e2e935
@anilbey
Have 500 and 530 amp targets for APThreshold
262bb1e
@anilbey
BUGFIX: use itertools.product instead of zip in multiplying target am…
d269192 
…p and tolerances
@anilbey
group imports at top
bc9a752
@anilbey
parametrise plotting and per-cell extraction
5c507d0
@anilbey
make timings immutable and not global
b5998dc
@anilbey
make read-only variables immutable
cc763fb
@anilbey
separate translating of targets from get_config
e5d0054
@anilbey
rename get_config -> get_files_metadata
1d3daf6
@anilbey
immutable where possible, use Mapping annotation
7ffe03f
@anilbey
rename cells_dir -> traces_dir
a194bb9
@anilbey
somatic val specify bluepyefe >= 2.1.24
dbdbb26
@anilbey
add somatic validation's feature extraction notebook
5b34a41
@anilbey
remove unused np import from feature-extraction nb
0f142db
@anilbey
update .gitignore
455267a
@anilbey
add somatic validation feature extraction test
b559044
@anilbey
add somatic-validation to github ci
8d43a1d
@anilbey anilbey force-pushed the som-val branch 2 times, most recently from 125a1b2 to cbef350 Compare November 7, 2022 16:36
@anilbey anilbey merged commit 15ceda6 into main Nov 8, 2022
@arnaudon arnaudon deleted the som-val branch November 8, 2022 09:33
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@arnaudon arnaudon arnaudon approved these changes

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@anilbey @arnaudon